Basic Information
Locus ID:
nbis-gene-24620
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Leucine Rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00026.1 | 2372018 | 2373766 | - | nbis-gene-24620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 60,710.68 Da | 35.05 | 102.17 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 119 | 132 | 0.51 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 142 | 200 | 2.7E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 51 | 91 | 2.2E-10 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 495 | 578 | 7.88E-10 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 54 | 301 | 8.5E-45 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 50 | 209 | 2.3E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 212 | 302 | 3.1E-18 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 481 | 567 | 2.3E-11 | - |
| SMART | SM00369 | LRR_typ_2 | 117 | 141 | 6.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 211 | 234 | 74.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 165 | 189 | 78.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 490 | 582 | 9.418204 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34220.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_039808684.1 | probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Panicum virgatum] | 0 |
| Q94C77 | Receptor protein kinase-like protein At4g34220 OS=Arabidopsis thaliana OX=3702 GN=At4g34220 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6T8N6 | Putative LRR receptor-like serine/threonine-protein kinase OS=Panicum miliaceum OX=4540 GN=C2845_PM03G28710 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1112, jg28642, jg30680, jg39994 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_16710, gene_26528 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010013, Ah027611 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g127460, BVRB_9g223890 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg11099, Sbi_jg13086, Sbi_jg46070, Sbi_jg52769 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg20420, Seu_jg9080 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005528, GOSA_00010174 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33879, Sgl39251, Sgl55687, Sgl60905 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001703, gene:ENSEOMG00000016223 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0025540, CQ.Regalona.r1.7BG0005550 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30106830, pistato.v30205700 |
| Apiaceae | Apium graveolens | 1 | Ag9G00197 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G007640, contig69653366G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714255, gene-LOC103716219 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3242.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri13G24759, Ftri15G16133, Ftri18G22951, Ftri1G04342 ... |
| Brassicaceae | Arabidopsis thaliana | 5 | AT2G15300.1, AT2G23300.1, AT4G34220.1, AT4G37250.1 ... |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000055m.g.v1.0, Thhalv10003700m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g29380.v2.2, Sp3g28580.v2.2, Sp4g02300.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB01g020540.2N, BniB04g026890.2N, BniB05g001630.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G1359, Ceq09G0365 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G1364, Cgl09G0403 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g02560 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g00550 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-10056, nbisL1-mrna-10545, nbisL1-mrna-6650 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2082, evm.TU.LG03.1036, evm.TU.LG08.528 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00007661, Pov_00023861 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G06363, Lb2G13584, Lb3G17451, Lb5G27310, Lb5G27839 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.1206, AH06.2402, BH03.1395, BH06.2198, CH03.1511 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0524100, gene-QOZ80_6AG0545950 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0467840.1, HORVU.MOREX.r3.7HG0746230.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_003887, gene-QYE76_019894, gene-QYE76_036731 |
| Poaceae | Oryza coarctata | 4 | Oco11G013540, Oco12G013680, Oco17G000240, Oco18G000220 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G087500, gene-BS78_10G202300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401633, Pt_Chr0401656, Pt_Chr0705139 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G030620, Chr05G008370, Chr10G004700, Chr10G018660 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G274800, Tel7E01G912300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG026530, gene_TRIDC5BG027720 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G160500.1, TraesCS5B02G158000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb095660_P001, Zm00001eb307320_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-24619, nbis-gene-24620, nbis-gene-40936 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g30866, Zma_g31972, Zma_g33117 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG02.1517, evm.TU.LG04.1050, evm.TU.LG05.129 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05260 |
| Rhizophoraceae | Bruguiera sexangula | 5 | evm.TU.60424.1, evm.TU.Scaffold_1_RagTag.2068 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-17303, nbisL1-mrna-4844, nbisL1-mrna-5876 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-15142, nbisL1-mrna-20892, nbisL1-mrna-7755 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-11937, nbisL1-mrna-3468, nbisL1-mrna-6109 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000009l.745, evm.TU.utg000011l.1121 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00006266, Maker00007721, Maker00012450, Maker00017030 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-15478, nbisL1-mrna-2519, nbisL1-mrna-4785 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-14011, nbisL1-mrna-2194, nbisL1-mrna-3253 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu01544, populus_peu14428, populus_peu23350 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598998, gene-LOC132622378 |
| Solanaceae | Solanum chilense | 2 | SOLCI004061300, SOLCI005941300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007771, gene-LOC107011791 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.11561_chr02_+, STRG.6522_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1803, TC10G0337 |
| Zosteraceae | Zostera marina | 2 | Zosma03g23560.v3.1, Zosma05g19480.v3.1 |