Basic Information
Locus ID:
nbis-gene-24560
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Fasciclin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00026.1 | 1567323 | 1570470 | - | nbis-gene-24560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 44,030.66 Da | 42.88 | 82.40 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 22 | 97 | 1.7E-5 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 180 | 311 | 6.8E-14 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 16 | 111 | 4.84E-14 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 174 | 311 | 5.1E-19 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 8 | 144 | 9.9E-9 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 176 | 311 | 3.6E-10 | IPR036378 |
| SMART | SM00554 | fasc_3 | 206 | 312 | 7.3E-12 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 167 | 309 | 10.703627 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 10 | 139 | 10.244556 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 357 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 0 |
| RefSeq | XP_025799878.1 | fasciclin-like arabinogalactan protein 2 [Panicum hallii] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7EPX1 | FAS1 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_2G161600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology