Basic Information
Locus ID:
nbis-gene-24502
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
domain in transcription factors and synapse-associated proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00026.1 | 1198464 | 1205084 | + | nbis-gene-24502 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 100,271.09 Da | 59.61 | 66.16 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 166 | 295 | 7.11813E-54 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 168 | 293 | 7.2E-40 | IPR000608 |
| Pfam | PF03909 | BSD domain | 705 | 761 | 2.0E-13 | IPR005607 |
| SUPERFAMILY | SSF140383 | BSD domain-like | 675 | 763 | 4.71E-22 | IPR035925 |
| SUPERFAMILY | SSF54495 | UBC-like | 162 | 292 | 1.84E-47 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 159 | 297 | 1.3E-50 | IPR016135 |
| Gene3D | G3DSA:1.10.3970.10 | BSD domain | 667 | 769 | 1.3E-24 | IPR035925 |
| SMART | SM00751 | wurzfinal6 | 705 | 757 | 3.8E-16 | IPR005607 |
| SMART | SM00212 | ubc_7 | 167 | 322 | 1.9E-53 | - |
| ProSiteProfiles | PS50858 | BSD domain profile. | 705 | 757 | 16.257061 | IPR005607 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 164 | 313 | 42.948673 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 237 | 252 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 793 | 814 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 392 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 893 | 934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 769 | 943 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 511 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 326 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 863 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 792 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 433 | - | - |
| Coils | Coil | Coil | 502 | 529 | - | - |
| Coils | Coil | Coil | 914 | 934 | - | - |
| Coils | Coil | Coil | 397 | 421 | - | - |
| Coils | Coil | Coil | 442 | 466 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50490.1 | ubiquitin-conjugating enzyme 20. Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in diving cells, but also in other non-dividing cells. | 0 |
| RefSeq | XP_004967719.1 | BSD domain-containing protein 1 [Setaria italica] | 0 |
| Q8L7T3 | Ubiquitin-conjugating enzyme E2 20 OS=Arabidopsis thaliana OX=3702 GN=UBC20 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UFY2 | BSD domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_32347 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12495, jg27946, jg35264, jg37885 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_21395, gene_26206 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006194 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g083720 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg16749 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23002 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008170 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24891, Sgl30036 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011428, gene:ENSEOMG00000030124 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0010990, CQ.Regalona.r1.4BG0011180 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30083880, pistato.v30237950 |
| Apiaceae | Apium graveolens | 2 | Ag11G04047, Ag1G01918 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G017790, COCNU_04G007510 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103695672, gene-LOC103721001, gene-LOC103723005 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_04.1112.V1.1, AsparagusV1_05.1051.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G31879, Ftri12G08473, Ftri3G08167 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03350.1, AT4G13110.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009692m.g.v1.0, Thhalv10025468m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02350.v2.2, Sp7g10530.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g000450.2N, BniB06g047460.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2162 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g06750, gene.Cymno03g14050 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0095s00036.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g00440, gene.Thate07g00080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6296, nbisL1-mrna-9654 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.993, evm.TU.LG11.1415 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008135, Pov_00026251 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G26065 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.868, AH03.3906, AH06.427, BH02.1263, BH03.4195 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0004180, gene-QOZ80_1BG0052590 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0118810.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004577, gene-QYE76_039190, gene-QYE76_052366 |
| Poaceae | Oryza coarctata | 4 | Oco01G007720, Oco02G008030, Oco13G014330, Oco14G015220 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g16670.1, LOC_Os07g45310.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G374300, gene-BS78_08G069700 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603782, Pt_Chr0603863 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr03G001330, Chr05G004630, Chr08G003790, Chr0G021260 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G284700, Tel3E01G321500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG017480, gene_TRIDC2BG021020 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G140100.1.cds1, TraesCS2B02G164200.1.cds1 ... |
| Poaceae | Zea mays | 8 | Zm00001eb128590_P001, Zm00001eb236190_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-219, nbis-gene-24502, nbis-gene-33139 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g5690, Zma_g6977, Zma_g9680 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1775, evm.TU.LG15.1403 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34680 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.505, evm.TU.Scaffold_5_RagTag.939 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11402, nbisL1-mrna-1457, nbisL1-mrna-21334 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-4423, nbisL1-mrna-7223, nbisL1-mrna-7711 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-11556, nbisL1-mrna-18418, nbisL1-mrna-564 ... |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000003l.196, add.evm.TU.utg000006l.105 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00009194, Maker00012868, Maker00013205 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17318, nbisL1-mrna-19303, nbisL1-mrna-20723 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-2067, nbisL1-mrna-5166, nbisL1-mrna-7559 |
| Salicaceae | Populus euphratica | 4 | populus_peu07834, populus_peu07835, populus_peu22016 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609615, gene-LOC132645023 |
| Solanaceae | Solanum chilense | 2 | SOLCI000747400, SOLCI005396700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009001, gene-LOC107031356 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6459 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1376 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26930.v3.1 |