Basic Information
Locus ID:
nbis-gene-24384
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00026.1 | 687824 | 694057 | - | nbis-gene-24384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 60,676.88 Da | 42.82 | 81.75 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00673 | ribosomal L5P family C-terminus | 440 | 538 | 8.9E-20 | IPR031309 |
| Pfam | PF00281 | Ribosomal protein L5 | 377 | 436 | 7.4E-18 | IPR031310 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 41 | 291 | 4.58E-29 | IPR036322 |
| SUPERFAMILY | SSF55282 | RL5-like | 376 | 547 | 9.42E-53 | IPR022803 |
| Gene3D | G3DSA:3.30.1440.10 | - | 369 | 551 | 1.6E-69 | IPR022803 |
| Gene3D | G3DSA:2.130.10.10 | - | 186 | 339 | 1.8E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 185 | 2.5E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 78 | 117 | 7.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 123 | 161 | 0.25 | IPR001680 |
| SMART | SM00320 | WD40_4 | 177 | 213 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 34 | 75 | 0.017 | IPR001680 |
| ProSitePatterns | PS00358 | Ribosomal protein L5 signature. | 413 | 429 | - | IPR020929 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 294 | 313 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42740.1 | ribosomal protein large subunit 16A. encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment. | 0 |
| RefSeq | XP_020405266.1 | uncharacterized protein LOC100279942 isoform X1 [Zea mays] | 0 |
| A2YDY2 | Large ribosomal subunit protein uL5 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9UHM8 | Rho_N domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_32505 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg19296, jg21322, jg23826, jg36765, jg7853 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26007 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah011715, Ah035922, Ah035923 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g209130 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg10186, Sbi_jg11999, Sbi_jg26394, Sbi_jg46926 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg21214, Seu_jg22250 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009557 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl54387, Sgl59719, Sgl80403, Sgl82864 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000018004, gene:ENSEOMG00000029355 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0009700, CQ.Regalona.r1.9BG0012890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30072060 |
| Apiaceae | Apium graveolens | 3 | Ag2G01661, Ag3G00530, Ag8G00963 |
| Arecaceae | Cocos nucifera | 3 | COCNU_03G013930, COCNU_05G010030, scaffold021465G000040 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701994, gene-LOC103704876, gene-LOC103711522 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.1566.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri11G30229, Ftri15G06658, Ftri18G20368 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G42740.1, AT3G58700.1, AT4G18730.1, AT5G45775.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001041m.g.v1.0, Thhalv10006260m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g10690.v2.2, Sp5g04150.v2.2, Sp7g17430.v2.2 |
| Brassicaceae | Brassica nigra | 9 | BniB02g062710.2N, BniB02g071770.2N, BniB04g011450.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2890 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G3012 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g16400 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0453s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g23180 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-3431, nbisL1-mrna-7565, nbisL1-mrna-909 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.1687, evm.TU.LG12.796 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001769, Pov_00028336 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G00417, Lb2G11900, Lb4G24322, Lb4G24342 |
| Poaceae | Echinochloa crus-galli | 7 | AH02.328, AH02.329, AH06.1960, BH02.356, BH06.1793, CH02.393 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0107340, gene-QOZ80_2BG0160980 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_010406, gene-QYE76_017921, gene-QYE76_051042 |
| Poaceae | Oryza coarctata | 6 | Oco01G004640, Oco02G004650, Oco04G006670, Oco09G004400 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g10820.1, LOC_Os02g14059.1, LOC_Os05g11710.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_03G024100, gene-BS78_04G099200 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205165, Pt_Chr0206401, Pt_Chr0501510 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr02G028760, Chr05G006410, Chr10G016130, Chr11G006260 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G124200, Tel1E01G228500, Tel3E01G230800 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG017970, gene_TRIDC1BG021990 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G125100.1, TraesCS1B02G144300.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb120820_P001, Zm00001eb204910_P002 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10255, nbis-gene-19309, nbis-gene-24384 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g30681, Zma_g32919, Zma_g9596 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.376, evm.TU.LG02.2043, evm.TU.LG04.379 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g02650, gene.Posoc08g09920 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_12_RagTag.813, evm.TU.Scaffold_5_RagTag.1285 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11763, nbisL1-mrna-21000, nbisL1-mrna-24047 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16678 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11168, nbisL1-mrna-18676, nbisL1-mrna-7705 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.753, evm.TU.utg000027l.145 |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00006312, Maker00009943, Maker00013995 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1330, nbisL1-mrna-9790 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19981, nbisL1-mrna-4895 |
| Salicaceae | Populus euphratica | 7 | populus_peu12208, populus_peu14366, populus_peu14367 ... |
| Solanaceae | Lycium barbarum | 5 | gene-LOC132618097, gene-LOC132623030, gene-LOC132629901 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI000358800, SOLCI000416100, SOLCI003236600 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107002727, gene-LOC107007694, gene-LOC107010651 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_13431, gene_5825, gene_9753 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G1965, TC08G0419 |
| Zosteraceae | Zostera marina | 1 | Zosma01g23310.v3.1 |