Basic Information
Locus ID:
nbis-gene-24271
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00026.1 | 192910 | 194907 | - | nbis-gene-24271 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 26,677.92 Da | 52.84 | 67.17 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 21 | 237 | 1.5E-78 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 126 | 227 | 3.83E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 125 | 240 | 1.3E-40 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 131 | 228 | 26.410748 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 95 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | NP_001130483.1 | IAA17-auxin-responsive Aux/IAA family member [Zea mays] | 0 |
| Q5NB25 | Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9CXY9 | Auxin-responsive protein OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology