Basic Information
Locus ID:
nbis-gene-24078
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00025.1 | 2304328 | 2307713 | + | nbis-gene-24078 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 23,927.07 Da | 35.54 | 67.49 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 124 | 167 | 4.1E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 169 | 3.53E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 192 | 3.4E-12 | IPR013083 |
| SMART | SM00744 | ringv_2 | 123 | 188 | 8.4E-10 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 116 | 188 | 13.644183 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01070.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_004961898.1 | uncharacterized protein LOC101769852 [Setaria italica] | 0 |
| TrEMBL | A0A1E5WFS8 | RING-CH-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0002971 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology