Basic Information
Locus ID:
nbis-gene-23530
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00024.1 | 1969484 | 1972192 | + | nbis-gene-23530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.29 | 52,709.31 Da | 48.51 | 73.07 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 104 | 347 | 9.89E-18 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 34 | 371 | 7.5E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 305 | 346 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 302 | 1.3 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40810.1 | homolog of yeast autophagy 18C. | 0 |
| RefSeq | XP_034586482.1 | autophagy-related protein 18d-like [Setaria viridis] | 0 |
| Q8GYD7 | Autophagy-related protein 18c OS=Arabidopsis thaliana OX=3702 GN=ATG18C PE=2 SV=1 | 0 | |
| TrEMBL | A0A4V6Y8M4 | WD_REPEATS_REGION domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G100700v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology