Basic Information
Locus ID:
nbis-gene-23497
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00024.1 | 1727465 | 1734485 | - | nbis-gene-23497 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 59,445.31 Da | 63.10 | 64.05 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12678 | RING-H2 zinc finger domain | 495 | 535 | 3.4E-10 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 500 | 537 | 6.36E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 487 | 544 | 2.8E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 495 | 535 | 9.759973 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 233 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G45180.2 | - | 0 |
| RefSeq | XP_034601781.1 | probable E3 ubiquitin-protein ligase HIP1 [Setaria viridis] | 0 |
| Q9FMM4 | Probable E3 ubiquitin-protein ligase RHG1A OS=Arabidopsis thaliana OX=3702 GN=RHG1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9U1E7 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_33406 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology