Basic Information
Locus ID:
nbis-gene-23448
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00024.1 | 1321784 | 1324755 | + | nbis-gene-23448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.32 | 25,495.68 Da | 45.59 | 85.20 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 43 | 228 | 4.2E-95 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 61 | 181 | 1.3E-26 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 42 | 229 | 1.2E-98 | - |
| ProSitePatterns | PS01106 | Ribosomal protein L18e signature. | 91 | 108 | - | IPR021132 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 229 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27850.1 | Ribosomal protein L18e/L15 superfamily protein. | 0 |
| RefSeq | XP_002439318.1 | 60S ribosomal protein L18-3 [Sorghum bicolor] | 0 |
| Q940B0 | Large ribosomal subunit protein eL18x OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1 | 0 | |
| TrEMBL | C5Z0J3 | Ribosomal_L18e/L15P domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3009G050300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology