Basic Information
Locus ID:
nbis-gene-23089
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00023.1 | 2327337 | 2329481 | - | nbis-gene-23089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.96 | 69,142.06 Da | 51.83 | 76.80 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 283 | 409 | 2.45416E-12 | IPR002083 |
| CDD | cd00121 | MATH | 87 | 213 | 4.56978E-14 | IPR002083 |
| Pfam | PF00917 | MATH domain | 101 | 213 | 1.2E-4 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 443 | 555 | 1.0E-16 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 82 | 216 | 1.96E-19 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 440 | 555 | 1.14E-18 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 280 | 415 | 3.76E-15 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 428 | 587 | 1.3E-33 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 86 | 216 | 2.2E-18 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 282 | 415 | 1.7E-11 | IPR008974 |
| SMART | SM00061 | math_3 | 88 | 195 | 0.0047 | IPR002083 |
| SMART | SM00225 | BTB_4 | 449 | 558 | 2.7E-15 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 83 | 212 | 15.072486 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 449 | 516 | 13.797939 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 280 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.2 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_034585246.1 | BTB/POZ and MATH domain-containing protein 1-like [Setaria viridis] | 0 |
| TrEMBL | K3ZEL5 | BTB domain-containing protein OS=Setaria italica OX=4555 GN=101785763 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300850, gene-QOZ80_4BG0331560 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G001920, Chr25G001520, Chr30G001520 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23089 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20606 |