Basic Information
Locus ID:
nbis-gene-22999
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Chloride channel protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00023.1 | 1949520 | 1954438 | + | nbis-gene-22999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 57,577.44 Da | 32.99 | 102.77 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 256 | 348 | 9.77405E-21 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 70 | 224 | 3.6E-12 | IPR039010 |
| Pfam | PF00168 | C2 domain | 254 | 348 | 8.1E-15 | IPR000008 |
| Pfam | PF00168 | C2 domain | 422 | 461 | 5.2E-7 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 252 | 374 | 5.36E-25 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 419 | 502 | 6.55E-14 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 247 | 372 | 2.5E-24 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 406 | 462 | 7.1E-10 | IPR035892 |
| SMART | SM00239 | C2_3c | 255 | 345 | 9.4E-16 | IPR000008 |
| SMART | SM00239 | C2_3c | 423 | 483 | 57.0 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 235 | 368 | 15.641443 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 241 | 25.527695 | IPR031468 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_015637265.1 | synaptotagmin-5 [Oryza sativa Japonica Group] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TYB8 | Synaptotagmin-5-like OS=Eragrostis curvula OX=38414 GN=EJB05_39884 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology