Basic Information
Locus ID:
nbis-gene-22751
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00023.1 | 891419 | 895380 | + | nbis-gene-22751 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.73 | 82,991.59 Da | 48.73 | 70.37 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 162 | 445 | 4.75282E-39 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 322 | 360 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 271 | 306 | 2.7E-7 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 189 | 247 | 1.1E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 412 | 445 | 0.038 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 148 | 447 | 1.26E-56 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 97 | 448 | 1.3E-121 | IPR015943 |
| Gene3D | G3DSA:1.10.10.60 | - | 714 | 746 | 2.5E-8 | - |
| SMART | SM00320 | WD40_4 | 318 | 360 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 363 | 403 | 410.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 225 | 263 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 306 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 2.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 445 | 5.4E-5 | IPR001680 |
| TIGRFAM | TIGR01557 | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 715 | 740 | 1.5E-7 | IPR006447 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 274 | 308 | 11.65559 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 413 | 446 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 413 | 446 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 190 | 222 | 8.913786 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 274 | 315 | 15.153581 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 231 | 12.01227 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 293 | 307 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 679 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 678 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_039773777.1 | cell division cycle 20.2, cofactor of APC complex-like [Panicum virgatum] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TX68 | CobW C-terminal domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_39438 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology