Basic Information
Locus ID:
nbis-gene-22636
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
BRH1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00023.1 | 437025 | 437648 | - | nbis-gene-22636 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 22,951.18 Da | 48.84 | 92.37 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 108 | 151 | 3.8401E-15 | - |
| Pfam | PF13639 | Ring finger domain | 107 | 151 | 2.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 157 | 3.77E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 157 | 1.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 108 | 150 | 2.7E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 107 | 151 | 0.0043 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 108 | 151 | 12.061441 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_034602045.1 | E3 ubiquitin-protein ligase RHA1B-like [Setaria viridis] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6Q4P9 | E3 ubiquitin-protein ligase RHA1B-like OS=Panicum miliaceum OX=4540 GN=C2845_PM15G19400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology