Basic Information
Locus ID:
nbis-gene-22625
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00023.1 | 379981 | 384217 | + | nbis-gene-22625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 33,752.99 Da | 50.87 | 64.42 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 173 | 4.2E-65 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 98 | 171 | 4.4E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 5 | 96 | 1.5E-29 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 274 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_025826441.1 | ubiquitin fusion degradation protein 1 homolog [Panicum hallii] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A811QX00 | Ubiquitin fusion degradation protein 1 homolog OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS45955 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology