Basic Information
Locus ID:
nbis-gene-2259
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
GAE4
Description:
RmlD substrate binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00002.1 | 3973162 | 3975008 | - | nbis-gene-2259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 19,999.76 Da | 53.70 | 84.53 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 83 | 177 | 8.7E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 81 | 178 | 7.72E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 68 | 180 | 1.2E-46 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 83 | 177 | 3.7E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 81 | 178 | 5.2E-39 | IPR005729 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 138 | 152 | 1.2E-12 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 116 | 131 | 1.2E-12 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 81 | 94 | 1.2E-12 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 79 | 178 | 18.211569 | IPR001848 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 39 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G45030.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_008653503.2 | 40S ribosomal protein S20-2 [Zea mays] | 0 |
| P49200 | Small ribosomal subunit protein uS10z/uS10x OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2 | 0 | |
| TrEMBL | K4AGM8 | Ribosomal_S10 domain-containing protein OS=Setaria italica OX=4555 GN=101763112 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology