Basic Information
Locus ID:
nbis-gene-2242
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
NTMC2T4.2
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00002.1 | 3912172 | 3914014 | + | nbis-gene-2242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 40,103.19 Da | 24.21 | 99.55 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 126 | 214 | 4.33726E-28 | - |
| Pfam | PF00168 | C2 domain | 124 | 219 | 4.2E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 120 | 230 | 1.71E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 118 | 290 | 2.1E-29 | IPR035892 |
| SMART | SM00239 | C2_3c | 125 | 223 | 7.8E-21 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 1 | 109 | 10.759499 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 107 | 226 | 21.677889 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 188 | 196 | 7.3E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 166 | 179 | 7.3E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 141 | 153 | 7.3E-6 | IPR000008 |
| Coils | Coil | Coil | 269 | 289 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_004987077.1 | synaptotagmin-5 [Setaria italica] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WID9 | Synaptotagmin-5 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_07313 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology