Basic Information
Locus ID:
nbis-gene-22274
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00022.1 | 2276645 | 2284699 | - | nbis-gene-22274 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.91 | 53,711.72 Da | 38.51 | 69.30 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18044 | CCCH-type zinc finger | 237 | 257 | 1.2E-5 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 303 | 2.5E-5 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 234 | 258 | 1.06E-5 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 264 | 492 | 4.03E-29 | IPR036322 |
| Gene3D | G3DSA:2.30.30.1190 | - | 229 | 263 | 3.3E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 264 | 335 | 8.0E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 336 | 496 | 5.7E-13 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 233 | 259 | 5.3E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 157 | 181 | 0.1 | IPR000571 |
| SMART | SM00320 | WD40_4 | 343 | 380 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 454 | 491 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 451 | 47.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 341 | 440.0 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 233 | 260 | 15.581776 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 156 | 182 | 10.718223 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 303 | 11.049229 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_039790910.1 | zinc finger CCCH domain-containing protein 17-like [Panicum virgatum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A835FPK4 | Zinc finger CCCH domain-containing protein 48 OS=Digitaria exilis OX=1010633 GN=HU200_007179 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology