Basic Information
Locus ID:
nbis-gene-2224
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00002.1 | 3820421 | 3830167 | + | nbis-gene-2224 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 87,600.94 Da | 43.03 | 74.37 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 666 | 699 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 353 | 384 | 0.1 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 294 | 384 | 1.1E-8 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 345 | 699 | 1.34E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 547 | 762 | 3.7E-24 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 280 | 388 | 4.5E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 389 | 546 | 4.6E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 660 | 699 | 1.9E-5 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.9E-12 | IPR006595 |
| SMART | SM00320 | WD40_4 | 343 | 386 | 0.67 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 287 | 326 | 46.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 614 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 447 | 487 | 6.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 617 | 657 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 444 | 36.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 12.865168 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 667 | 708 | 12.346452 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 667 | 699 | 10.179234 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 796 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 796 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025792940.1 | protein TPR3 isoform X4 [Panicum hallii] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WID1 | TOPLESS OS=Eragrostis curvula OX=38414 GN=EJB05_07303 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology