halophFGD

Basic Information

Locus ID: nbis-gene-2219

Species & Taxonomic ID: Zoysia japonica & 309978

Genome Assembly: GCA_040438285.1

Description: Prokaryotic RING finger family 4

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Zjn_sc00002.1	3809320	3810527	+	nbis-gene-2219

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.29	21,298.30 Da	66.53	43.06	-0.95

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	50	64	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	64	-	-

KEGG Pathway

KO Term:

K10604 (E3 ubiquitin-protein ligase MGRN1 [EC:2.3.2.27])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G09770.2	RING/U-box superfamily protein.
RefSeq	XP_025795032.1	probable E3 ubiquitin-protein ligase LOG2 [Panicum hallii]
Swiss-Prot	Q9S752	Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1
TrEMBL	A0A3L6DG25	RING-type E3 ubiquitin transferase OS=Zea mays OX=4577 GN=Zm00014a_017137 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	5	jg12516, jg26594, jg32046, jg32617, jg3461
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14243, gene_2685
Amaranthaceae	Atriplex hortensis	2	Ah020111, Ah030358
Amaranthaceae	Beta vulgaris	1	BVRB_7g162220
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg2062, Sbi_jg34454, Sbi_jg38114, Sbi_jg6244
Amaranthaceae	Salicornia europaea	2	Seu_jg15599, Seu_jg2710
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00005789, GOSA_00020321
Amaranthaceae	Suaeda glauca	4	Sgl01535, Sgl06705, Sgl71214, Sgl74784
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000009096, gene:ENSEOMG00000014764 ... gene:ENSEOMG00000032122, gene:ENSEOMG00000037534, gene:ENSEOMG00000038409, gene:ENSEOMG00000044187
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0013540, CQ.Regalona.r1.3BG0013560 ... CQ.Regalona.r1.7AG0016540, CQ.Regalona.r1.7BG0018270
Anacardiaceae	Pistacia vera	3	pistato.v30058740, pistato.v30237430, pistato.v30272420
Apiaceae	Apium graveolens	6	Ag1G01903, Ag2G02920, Ag4G01605, Ag5G02481, Ag5G02482 ... Ag8G01649
Arecaceae	Cocos nucifera	3	COCNU_04G007710, COCNU_10G000190, scaffold006799G000040
Arecaceae	Phoenix dactylifera	4	gene-LOC103703975, gene-LOC103708001, gene-LOC103708399 ... gene-LOC103712327
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.837.V1.1, AsparagusV1_07.1824.V1.1 ... AsparagusV1_07.2062.V1.1
Asteraceae	Flaveria trinervia	5	Ftri16G15953, Ftri17G18182, Ftri4G26866, Ftri6G28161 ... Ftri8G06309
Brassicaceae	Arabidopsis thaliana	5	AT3G06140.1, AT3G09770.1, AT3G53410.1, AT5G03200.1 ... AT5G19080.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10010573m.g.v1.0, Thhalv10013842m.g.v1.0 ... Thhalv10020903m.g.v1.0, Thhalv10021004m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp3g05090.v2.2, Sp3g08110.v2.2, Sp5g08930.v2.2 ... Sp6g25300.v2.2, Sp6g39520.v2.2
Brassicaceae	Brassica nigra	5	BniB01g057500.2N, BniB02g043740.2N, BniB05g030780.2N ... BniB06g057930.2N, BniB07g058050.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq08G1315, Ceq08G1719, Ceq09G1292
Casuarinaceae	Casuarina glauca	3	Cgl08G1341, Cgl08G1759, Cgl09G1382
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno05g05790, gene.Cymno17g05250
Dunaliellaceae	Dunaliella salina	1	Dusal.0135s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate04g03360, gene.Thate06g19060
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-5413, nbisL1-mrna-5942
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1419, evm.TU.LG11.1115
Plantaginaceae	Plantago ovata	3	Pov_00001895, Pov_00005116, Pov_00022429
Plumbaginaceae	Limonium bicolor	2	Lb1G00810, Lb8G36594
Poaceae	Echinochloa crus-galli	8	AH01.4310, AH02.1837, AH05.2558, BH01.4616, BH02.1749 ... BH05.2653, CH01.4926, CH02.2021
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_1AG0017080, gene-QOZ80_3AG0241490 ... gene-QOZ80_3BG0286620, gene-QOZ80_5AG0374180, gene-QOZ80_5BG0422110
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.1HG0064020.1, HORVU.MOREX.r3.4HG0391130.1 ... HORVU.MOREX.r3.7HG0738940.1
Poaceae	Lolium multiflorum	6	gene-QYE76_013366, gene-QYE76_013435, gene-QYE76_064677 ... gene-QYE76_064682, gene-QYE76_069214, gene-QYE76_069224
Poaceae	Oryza coarctata	8	Oco01G010490, Oco02G010860, Oco05G008490, Oco06G008790 ... Oco09G009490, Oco10G009120, Oco19G001830, Oco20G002000
Poaceae	Oryza sativa	4	LOC_Os01g27720.1, LOC_Os03g15000.1, LOC_Os05g33000.2 ... LOC_Os10g13670.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G414700, gene-BS78_09G135300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0102078, Pt_Chr0102101, Pt_Chr0104226, Pt_Chr0505155 ... Pt_Chr0505412
Poaceae	Sporobolus alterniflorus	8	Chr01G021080, Chr01G029840, Chr03G009970, Chr04G006870 ... Chr07G004790, Chr12G009690, Chr12G016880, Chr22G009080
Poaceae	Thinopyrum elongatum	3	Tel1E01G410600, Tel4E01G384300, Tel7E01G826000
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG037300, gene_TRIDC1BG042270 ... gene_TRIDC4AG011400, gene_TRIDC4BG039020, gene_TRIDC7AG067800, gene_TRIDC7BG061660
Poaceae	Triticum aestivum	7	TraesCS1B02G258900.1, TraesCS4A02G083500.1 ... TraesCS4B02G220700.1, TraesCS4D02G221000.1, TraesCS7A02G486700.1, TraesCS7B02G390000.1, TraesCS7D02G473200.1
Poaceae	Zea mays	4	Zm00001eb011040_P001, Zm00001eb235080_P001 ... Zm00001eb287460_P001, Zm00001eb398400_P001
Poaceae	Zoysia japonica	4	nbis-gene-14515, nbis-gene-2219, nbis-gene-3854 ... nbis-gene-6300
Poaceae	Zoysia macrostachya	4	Zma_g10349, Zma_g1616, Zma_g26812, Zma_g4001
Portulacaceae	Portulaca oleracea	5	evm.TU.LG04.958, evm.TU.LG06.1680, evm.TU.LG07.1395 ... evm.TU.LG10.1621, evm.TU.LG11.1035
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g11620, gene.Posoc10g03480
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_12_RagTag.356, evm.TU.Scaffold_1_RagTag.1566 ... evm.TU.Scaffold_2_RagTag.2035, evm.TU.Scaffold_2_RagTag.867, evm.TU.Scaffold_3_RagTag.487, evm.TU.Scaffold_6_RagTag.694
Rhizophoraceae	Carallia pectinifolia	6	nbisL1-mrna-15992, nbisL1-mrna-24381, nbisL1-mrna-24421 ... nbisL1-mrna-4336, nbisL1-mrna-5271, nbisL1-mrna-5367
Rhizophoraceae	Ceriops tagal	6	nbisL1-mrna-17059, nbisL1-mrna-18805, nbisL1-mrna-20806 ... nbisL1-mrna-21028, nbisL1-mrna-4133, nbisL1-mrna-6458
Rhizophoraceae	Ceriops zippeliana	6	nbisL1-mrna-13705, nbisL1-mrna-19629, nbisL1-mrna-3897 ... nbisL1-mrna-582, nbisL1-mrna-6212, nbisL1-mrna-9982
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000009l.75, evm.TU.utg000009l.875 ... evm.TU.utg000011l.420, evm.TU.utg000016l.551, evm.TU.utg000019l.924, evm.TU.utg000027l.357
Rhizophoraceae	Kandelia obovata	6	Maker00004933, Maker00006129, Maker00007331, Maker00012622 ... Maker00017069, Maker00018192
Rhizophoraceae	Rhizophora apiculata	6	nbisL1-mrna-12636, nbisL1-mrna-12962, nbisL1-mrna-15354 ... nbisL1-mrna-5630, nbisL1-mrna-6322, nbisL1-mrna-7724
Rhizophoraceae	Rhizophora mangle	6	nbisL1-mrna-11851, nbisL1-mrna-16180, nbisL1-mrna-2086 ... nbisL1-mrna-330, nbisL1-mrna-3430, nbisL1-mrna-5866
Salicaceae	Populus euphratica	7	populus_peu07870, populus_peu11701, populus_peu13437 ... populus_peu15776, populus_peu17885, populus_peu25745, populus_peu25760
Solanaceae	Lycium barbarum	4	gene-LOC132605353, gene-LOC132630067, gene-LOC132644997 ... gene-LOC132645875
Solanaceae	Solanum chilense	5	SOLCI000020600, SOLCI000598300, SOLCI001863100 ... SOLCI002498600, SOLCI002863600
Solanaceae	Solanum pennellii	5	gene-LOC107002433, gene-LOC107008150, gene-LOC107029214 ... gene-LOC107031539, gene-LOC107032115
Tamaricaceae	Reaumuria soongarica	3	STRG.27378_chr04_+, STRG.4578_chr02_+, gene_7567
Tamaricaceae	Tamarix chinensis	3	TC02G1878, TC07G0696, TC12G1457
Zosteraceae	Zostera marina	2	Zosma01g32410.v3.1, Zosma03g22950.v3.1