Basic Information
Locus ID:
nbis-gene-22178
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
nucleic acid binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00022.1 | 1895362 | 1897032 | + | nbis-gene-22178 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 40,781.64 Da | 30.32 | 68.13 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 65 | 6.7E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 78 | 2.17E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 73 | 2.6E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 4 | 73 | 3.2E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 3 | 77 | 11.05946 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 380 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_004953570.1 | binding partner of ACD11 1 [Setaria italica] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UWW7 | RRM domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19615 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology