Basic Information
Locus ID:
nbis-gene-22148
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00022.1 | 1778246 | 1783101 | - | nbis-gene-22148 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 83,060.38 Da | 55.06 | 71.72 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 159 | 442 | 4.67448E-42 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 188 | 244 | 3.0E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 303 | 1.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 319 | 357 | 0.014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 407 | 442 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 146 | 444 | 2.04E-59 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 96 | 445 | 1.4E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 360 | 400 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 260 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 315 | 357 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 6.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 219 | 8.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 442 | 8.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 304 | 11.681953 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 14.552052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 228 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 410 | 443 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 410 | 443 | 12.714052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 429 | 443 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 290 | 304 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 694 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 592 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 592 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_025808881.1 | cell division cycle 20.2, cofactor of APC complex-like [Panicum hallii] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UW77 | ANAPC4_WD40 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_19631 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology