Basic Information
Locus ID:
nbis-gene-22
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the ubiquitin-activating E1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00001.1 | 126871 | 131576 | - | nbis-gene-22 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 88,180.51 Da | 38.16 | 85.70 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16190 | Ubiquitin-activating enzyme E1 FCCH domain | 215 | 264 | 6.9E-14 | IPR032418 |
| Pfam | PF09358 | Ubiquitin fold domain | 697 | 786 | 9.8E-22 | IPR018965 |
| Pfam | PF00899 | ThiF family | 286 | 685 | 2.1E-68 | IPR000594 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 510 | 630 | 9.1E-26 | IPR019572 |
| Pfam | PF00899 | ThiF family | 53 | 152 | 3.8E-21 | IPR000594 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 471 | 514 | 4.5E-9 | IPR019572 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 46 | 266 | 1.27E-55 | IPR035985 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 281 | 681 | 4.97E-96 | IPR035985 |
| Gene3D | G3DSA:3.50.50.80 | - | 43 | 154 | 4.3E-34 | IPR042449 |
| Gene3D | G3DSA:3.40.50.720 | - | 300 | 499 | 7.7E-52 | - |
| Gene3D | G3DSA:3.10.290.60 | - | 699 | 789 | 5.5E-21 | IPR038252 |
| Gene3D | G3DSA:3.40.50.12550 | - | 155 | 232 | 1.9E-9 | - |
| Gene3D | G3DSA:3.40.50.12550 | - | 253 | 299 | 9.2E-10 | - |
| Gene3D | G3DSA:1.10.10.2660 | - | 506 | 636 | 2.0E-31 | IPR042063 |
| SMART | SM00985 | UBA_e1_C_a_2 | 664 | 786 | 8.0E-47 | IPR018965 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 177 | 204 | 3.5E-26 | IPR000011 |
| PRINTS | PR01849 | Ubiquitin-activating enzyme E1 signature | 73 | 97 | 3.5E-26 | IPR000011 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 46 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30110.1 | ubiquitin-activating enzyme 1. Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling. | 0 |
| RefSeq | XP_025802919.1 | ubiquitin-activating enzyme E1 3 isoform X1 [Panicum hallii] | 0 |
| P31252 | Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum OX=4565 GN=UBA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SER0 | E1 ubiquitin-activating enzyme (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_56928 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology