Basic Information
Locus ID:
nbis-gene-21958
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00022.1 | 1061896 | 1063879 | - | nbis-gene-21958 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 33,265.75 Da | 59.91 | 85.93 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 198 | 240 | 2.37369E-17 | - |
| Pfam | PF13639 | Ring finger domain | 197 | 240 | 7.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 246 | 6.42E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 160 | 245 | 2.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 198 | 239 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 198 | 240 | 12.238477 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 176 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 171 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_034571932.1 | E3 ubiquitin-protein ligase ATL23-like [Setaria viridis] | 0 |
| Q8L9W3 | E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana OX=3702 GN=ATL23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4U6WEY1 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_1G312300v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology