Basic Information
Locus ID:
nbis-gene-21903
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00022.1 | 844518 | 845888 | + | nbis-gene-21903 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 48,826.92 Da | 44.55 | 102.04 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 49 | 90 | 6.01876E-21 | - |
| Pfam | PF04564 | U-box domain | 45 | 116 | 1.9E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 221 | 438 | 1.5E-19 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 118 | 4.42E-29 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 117 | 2.8E-28 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 137 | 433 | 1.7E-19 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 48 | 111 | 1.9E-29 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 44 | 118 | 35.12804 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66160.1 | CYS, MET, PRO, and GLY protein 1. | 0 |
| RefSeq | XP_039791383.1 | U-box domain-containing protein 21-like [Panicum virgatum] | 0 |
| Q9C8D1 | U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UYX5 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_19965 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology