Basic Information
Locus ID:
nbis-gene-21756
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
AFB5
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00022.1 | 192257 | 197279 | - | nbis-gene-21756 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 70,788.25 Da | 51.25 | 88.92 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 323 | 362 | 2.7E-18 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 384 | 428 | 1.1E-20 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 402 | 586 | 1.88E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 362 | 619 | 1.2E-51 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 319 | 361 | 3.9E-14 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 279 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24390.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_002452866.1 | F-box protein FBX14 [Sorghum bicolor] | 0 |
| Q8RWQ8 | F-box protein FBX14 OS=Arabidopsis thaliana OX=3702 GN=FBX14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5VA55 | F-box protein FBX14 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0017033 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g12290 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028675 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21756 |