Basic Information
Locus ID:
nbis-gene-21446
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00021.1 | 861712 | 867885 | - | nbis-gene-21446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.15 | 76,223.98 Da | 65.02 | 62.48 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 342 | 387 | 3.04708E-26 | - |
| CDD | cd00201 | WW | 23 | 54 | 2.11552E-4 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 131 | 300 | 3.5E-49 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 13 | 55 | 1.91E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 122 | 314 | 4.44E-65 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 341 | 416 | 2.34E-19 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 340 | 400 | 2.3E-15 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 105 | 319 | 7.6E-78 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 62 | 3.1E-5 | - |
| SMART | SM00487 | ultradead3 | 126 | 329 | 8.3E-62 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.1E-5 | IPR001202 |
| SMART | SM00490 | helicmild6 | 272 | 378 | 1.2E-12 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.7233 | IPR001202 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 138 | 312 | 29.8617 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 273 | 417 | 14.133932 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 258 | 266 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 681 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 555 | 599 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 655 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 112 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 491 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 492 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 89 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 122 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_025819517.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Panicum hallii] | 0 |
| Q5JKF2 | DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0549400 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9VDI3 | DEAD-box ATP-dependent RNA helicase 14 OS=Eragrostis curvula OX=38414 GN=EJB05_15931 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology