Basic Information
Locus ID:
nbis-gene-21353
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the heat shock protein 70 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00021.1 | 75798 | 83059 | - | nbis-gene-21353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.45 | 30,171.14 Da | 59.38 | 74.71 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00012 | Hsp70 protein | 41 | 77 | 5.9E-13 | IPR013126 |
| SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 39 | 79 | 2.54E-12 | IPR043129 |
| Gene3D | G3DSA:3.30.420.40 | - | 23 | 107 | 8.6E-20 | - |
| ProSitePatterns | PS00297 | Heat shock hsp70 proteins family signature 1. | 44 | 51 | - | IPR018181 |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 68 | 80 | 7.2E-8 | - |
| PRINTS | PR00301 | 70kDa heat shock protein signature | 40 | 53 | 7.2E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 276 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42020.2 | Heat shock protein 70 (Hsp 70) family protein. Luminal binding protein (BiP2) involved in polar nuclei fusion during proliferation of endosperm nuclei. | 0 |
| RefSeq | XP_039808447.1 | heat shock 70 kDa protein BIP4-like [Panicum virgatum] | 0 |
| P24067 | Luminal-binding protein 2 OS=Zea mays OX=4577 GN=BIPE2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8T0RWI0 | Luminal-binding protein 5 OS=Panicum virgatum OX=38727 GN=PVAP13_5NG387200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg4466, jg9925 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1089, gene_7858 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah024065, Ah024075, Ah024102 |
| Amaranthaceae | Beta vulgaris | 7 | BVRB_1g001090, BVRB_1g009980, BVRB_1g010000, BVRB_1g010020 ... |
| Amaranthaceae | Salicornia bigelovii | 23 | Sbi_jg1802, Sbi_jg19658, Sbi_jg2790, Sbi_jg2799, Sbi_jg2800 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg17400, Seu_jg7085 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00022078, GOSA_00022084 |
| Amaranthaceae | Suaeda glauca | 7 | Sgl14506, Sgl15000, Sgl15009, Sgl18565, Sgl19684, Sgl20144 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000033389, gene:ENSEOMG00000033913 |
| Amaranthaceae | Chenopodium quinoa | 39 | CQ.Regalona.r1.1AG0012560, CQ.Regalona.r1.1AG0012580 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30175350, pistato.v30175380 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1481.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G09249, Ftri6G28205 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g07810.v2.2, Sp7g36660.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g015480.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0095 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl07G0086, Cgl07G0087 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g19540, gene.Cymno10g06190 |
| Hydrocharitaceae | Thalassia testudinum | 4 | gene.Thate01g33950, gene.Thate02g35410, gene.Thate04g04360 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00000413 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06328 |
| Poaceae | Echinochloa crus-galli | 6 | BH01.4477, BH01.4478, BH01.4483, BH02.1965, CH01.4734 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0243100, gene-QOZ80_3BG0285160 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013679, gene-QYE76_019558, gene-QYE76_054644 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102330 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr26G004680 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G869100, Telscf29001G000200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC1BG061620, gene_TRIDC2BG029110 ... |
| Poaceae | Triticum aestivum | 2 | TraesCS5B02G517800.1.cds1, TraesCS6A02G342600.1.cds1 |
| Poaceae | Zea mays | 2 | Zm00001eb280370_P001, Zm00001eb309670_P001 |
| Poaceae | Zoysia japonica | 10 | nbis-gene-15907, nbis-gene-19469, nbis-gene-2069 ... |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.1231 |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g32660, gene.Posoc01g33080, gene.Posoc01g38590 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14476 |
| Rhizophoraceae | Kandelia candel | 7 | add.evm.TU.utg000005l.59, add.evm.TU.utg000005l.62 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017138 |
| Salicaceae | Populus euphratica | 3 | populus_peu06415, populus_peu21246, populus_peu32250 |
| Solanaceae | Solanum chilense | 1 | SOLCI006984700 |