Basic Information
Locus ID:
nbis-gene-2124
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00002.1 | 3423378 | 3427829 | + | nbis-gene-2124 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.36 | 58,493.07 Da | 66.62 | 70.29 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 261 | 299 | 3.77848E-17 | - |
| Pfam | PF00412 | LIM domain | 261 | 301 | 3.4E-8 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 311 | 519 | 2.7E-95 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 255 | 286 | 4.2E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 248 | 318 | 1.3E-10 | - |
| SMART | SM00132 | lim_4 | 260 | 313 | 6.2E-4 | IPR001781 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 259 | 319 | 9.8011 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 261 | 295 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 470 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 196 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 29 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.3 | - | 0 |
| RefSeq | XP_004984915.1 | protein DA1-related 2 isoform X2 [Setaria italica] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WH47 | LIM zinc-binding domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_07215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology