Basic Information
Locus ID:
nbis-gene-20992
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the CRISP family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00020.1 | 1595320 | 1599515 | - | nbis-gene-20992 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 40,843.06 Da | 36.86 | 66.46 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05381 | CAP_PR-1 | 181 | 319 | 1.61237E-68 | - |
| CDD | cd05381 | CAP_PR-1 | 31 | 169 | 7.17702E-58 | - |
| Pfam | PF00188 | Cysteine-rich secretory protein family | 35 | 157 | 1.1E-17 | IPR014044 |
| Pfam | PF00188 | Cysteine-rich secretory protein family | 185 | 307 | 2.3E-16 | IPR014044 |
| SUPERFAMILY | SSF55797 | PR-1-like | 14 | 169 | 1.83E-42 | IPR035940 |
| SUPERFAMILY | SSF55797 | PR-1-like | 178 | 319 | 3.01E-39 | IPR035940 |
| Gene3D | G3DSA:3.40.33.10 | CAP | 179 | 319 | 2.4E-35 | IPR035940 |
| Gene3D | G3DSA:3.40.33.10 | CAP | 24 | 171 | 3.9E-37 | IPR035940 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 344 | 384 | 8.7E-7 | - |
| SMART | SM00198 | SCP_3 | 179 | 315 | 2.3E-41 | IPR014044 |
| SMART | SM00198 | SCP_3 | 29 | 165 | 4.9E-48 | IPR014044 |
| PRINTS | PR00837 | Allergen V5/Tpx-1 family signature | 200 | 218 | 1.6E-13 | IPR001283 |
| PRINTS | PR00837 | Allergen V5/Tpx-1 family signature | 272 | 288 | 1.6E-13 | IPR001283 |
| PRINTS | PR00837 | Allergen V5/Tpx-1 family signature | 248 | 261 | 1.6E-13 | IPR001283 |
| PRINTS | PR00837 | Allergen V5/Tpx-1 family signature | 302 | 315 | 1.6E-13 | IPR001283 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19690.1 | CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein. | 0 |
| RefSeq | XP_044343089.1 | uncharacterized protein LOC123063389 isoform X2 [Triticum aestivum] | 0 |
| Q00008 | Pathogenesis-related protein PRMS OS=Zea mays OX=4577 GN=PRMS PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S5XVT8 | Putative pathogenesis-related protein PR1-RK2 isoform 4 OS=Triticum aestivum OX=4565 GN=PR1-RK2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH07.1728, CH07.1580 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0130770 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g27310.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G250700 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G011710 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G766100 |
| Poaceae | Triticum aestivum | 2 | TraesCS3A02G477300.1, TraesCS3D02G472000.1 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20992 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13506 |