Basic Information
Locus ID:
nbis-gene-20865
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00020.1 | 964791 | 971618 | + | nbis-gene-20865 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 91,612.90 Da | 54.46 | 63.04 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 544 | 802 | 1.6E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 509 | 865 | 2.5E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 759 | 799 | 5.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 673 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 676 | 714 | 4.3E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 766 | 802 | 8.781968 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 766 | 802 | 10.441614 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 786 | 800 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 400 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | NP_001169326.1 | WD40 repeat protein [Zea mays] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9V3F5 | WD_REPEATS_REGION domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21492 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology