Basic Information
Locus ID:
nbis-gene-20790
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00020.1 | 671142 | 674397 | + | nbis-gene-20790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 55,689.28 Da | 49.33 | 90.23 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 111 | 142 | 7.23522E-18 | - |
| Pfam | PF04564 | U-box domain | 107 | 141 | 1.2E-11 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 104 | 167 | 4.24E-15 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 289 | 494 | 5.76E-14 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 150 | 1.4E-17 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 202 | 496 | 1.5E-13 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 110 | 181 | 4.4E-7 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 106 | 141 | 17.303955 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021315860.1 | E3 ubiquitin-protein ligase PUB23 [Sorghum bicolor] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6RPQ6 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM11G07170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology