Basic Information
Locus ID:
nbis-gene-2078
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00002.1 | 3213634 | 3219935 | - | nbis-gene-2078 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 76,646.25 Da | 47.35 | 92.04 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 337 | 379 | 1.48576E-26 | - |
| Pfam | PF04564 | U-box domain | 333 | 386 | 1.1E-14 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 324 | 385 | 3.99E-20 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 383 | 554 | 1.92E-21 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 327 | 385 | 2.7E-22 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 386 | 564 | 6.8E-23 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 336 | 391 | 1.4E-21 | IPR003613 |
| SMART | SM00185 | arm_5 | 381 | 421 | 23.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 270.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 425 | 465 | 14.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 510 | 550 | 140.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 436 | 478 | 8.9774 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 332 | 415 | 26.335415 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_034574241.1 | protein spotted leaf 11-like [Setaria viridis] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811M9R7 | RING-type E3 ubiquitin transferase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS1316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology