Basic Information
Locus ID:
nbis-gene-20554
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Zinc knuckle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00019.1 | 3285909 | 3290722 | - | nbis-gene-20554 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 73,632.67 Da | 60.42 | 60.12 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 263 | 304 | 2.58614E-13 | - |
| Pfam | PF08783 | DWNN domain | 4 | 82 | 3.1E-20 | IPR014891 |
| Pfam | PF13696 | Zinc knuckle | 173 | 191 | 6.8E-8 | IPR025829 |
| SUPERFAMILY | SSF57850 | RING/U-box | 251 | 327 | 9.42E-12 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 171 | 219 | 3.84E-9 | IPR036875 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 244 | 342 | 1.2E-12 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 169 | 196 | 6.9E-6 | - |
| Gene3D | G3DSA:4.10.60.10 | - | 197 | 240 | 1.7E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 86 | 3.9E-20 | - |
| SMART | SM00343 | c2hcfinal6 | 203 | 219 | 0.061 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 177 | 193 | 0.028 | IPR001878 |
| SMART | SM01180 | DWNN_2 | 4 | 83 | 1.9E-31 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 4 | 83 | 17.254761 | IPR014891 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 178 | 193 | 8.647267 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 204 | 218 | 8.762648 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 362 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 372 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 0 |
| RefSeq | XP_004982248.1 | E3 ubiquitin ligase PQT3-like isoform X1 [Setaria italica] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WBV3 | E3 ubiquitin ligase PQT3-like OS=Eragrostis curvula OX=38414 GN=EJB05_05332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology