Basic Information
Locus ID:
nbis-gene-20372
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00019.1 | 2184137 | 2186514 | - | nbis-gene-20372 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 60,119.14 Da | 57.69 | 69.63 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 266 | 308 | 4.7E-6 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 184 | 249 | 1.0E-12 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 264 | 314 | 1.03E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 184 | 256 | 6.25E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 196 | 6.36E-15 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 245 | 510 | 1.2E-50 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 197 | 4.4E-15 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 258 | 322 | 0.018 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 184 | 249 | 7.9E-17 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 114 | 163 | 9.833738 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 110 | 326 | 38.299156 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 231 | 240 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| Coils | Coil | Coil | 436 | 494 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16090.3 | - | 0 |
| RefSeq | XP_004986367.1 | probable E3 ubiquitin-protein ligase ARI2 [Setaria italica] | 0 |
| Q84RR2 | Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana OX=3702 GN=ARI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WDX3 | RBR-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_05595 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH01.1188, AH01.1189, CH01.1458, CH01.1459, CH04.2197 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0225740, gene-QOZ80_3AG0225750 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0341310.1, HORVU.MOREX.r3.4HG0341330.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062996, gene-QYE76_062997 |
| Poaceae | Oryza coarctata | 3 | Oco05G017350, Oco05G018400, Oco05G018410 |
| Poaceae | Oryza sativa | 3 | LOC_Os03g42760.1, LOC_Os03g42780.1, LOC_Os03g42790.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G150500, gene-BS78_01G150600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104418, Pt_Chr0104419 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G009910 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G115400, Tel4E01G115800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG038370, gene_TRIDC4BG011020 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS4A02G243200.1, TraesCS4B02G071700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb218920_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20372, nbis-gene-20381, nbis-gene-39694 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3254, Zma_g922 |