Basic Information
Locus ID:
nbis-gene-20334
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00019.1 | 1953829 | 1960670 | - | nbis-gene-20334 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 9,470.80 Da | 49.61 | 87.33 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 21 | 85 | 4.1E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 85 | 1.49E-11 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 12 | 86 | 1.7E-9 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 24 | 86 | 10.799049 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G67440.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_002464238.1 | BTB/POZ domain-containing protein NPY4 [Sorghum bicolor] | 0 |
| Q9FN09 | Phototropic-responsive NPH3 family protein NPY3 OS=Arabidopsis thaliana OX=3702 GN=NPY3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WE30 | BTB/POZ domain-containing protein NPY4 OS=Eragrostis curvula OX=38414 GN=EJB05_05714 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag6G02427 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11944 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G868800 |
| Poaceae | Triticum aestivum | 1 | TraesCS7D02G264400.1.cds1 |
| Poaceae | Zea mays | 3 | Zm00001eb305650_P001, Zm00001eb310110_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20334 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1179, evm.TU.LG16.1056 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc01g03430, gene.Posoc02g28470, gene.Posoc05g05550 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.548 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5859 |
| Salicaceae | Populus euphratica | 2 | populus_peu04681, populus_peu37962 |