Basic Information
Locus ID:
nbis-gene-20190
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
TTG1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00019.1 | 848222 | 868517 | + | nbis-gene-20190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 34,456.36 Da | 59.81 | 75.28 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00111 | 2Fe-2S iron-sulfur cluster binding domain | 262 | 308 | 1.0E-6 | IPR001041 |
| SUPERFAMILY | SSF54292 | 2Fe-2S ferredoxin-like | 259 | 311 | 2.36E-12 | IPR036010 |
| Gene3D | G3DSA:3.10.20.30 | - | 255 | 318 | 4.0E-17 | IPR012675 |
| ProSitePatterns | PS00197 | 2Fe-2S ferredoxin-type iron-sulfur binding region signature. | 295 | 303 | - | IPR006058 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 170 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24520.1 | Transducin/WD40 repeat-like superfamily protein. Required for the accumulation of purple anthocyanins in leaves and stems. Involved in trichome and root hair development. Controls epidermal cell fate specification. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Based on clonal analysis and other methonds TTG1 has been shown to act non-cell autonomously and to move via plasmodesmata between cells.Localization and levels of TTG1 affect patterning of leaf trichomes. | 0 |
| RefSeq | XP_003570109.1 | protein TRANSPARENT TESTA GLABRA 1 [Brachypodium distachyon] | 0 |
| Q6AUV1 | Xanthine dehydrogenase OS=Oryza sativa subsp. japonica OX=39947 GN=XDH PE=2 SV=1 | 0 | |
| TrEMBL | I1ICN1 | WD_REPEATS_REGION domain-containing protein OS=Brachypodium distachyon OX=15368 GN=100823168 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology