Basic Information
Locus ID:
nbis-gene-20000
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00018.1 | 3175505 | 3179876 | + | nbis-gene-20000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.32 | 36,789.75 Da | 56.06 | 85.84 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 83 | 1.04115E-26 | - |
| Pfam | PF00240 | Ubiquitin family | 4 | 85 | 1.1E-12 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 227 | 258 | 5.5E-11 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 141 | 179 | 6.4E-13 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 287 | 323 | 2.9E-11 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 138 | 186 | 4.47E-10 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 100 | 1.15E-18 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 269 | 338 | 1.07E-13 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 227 | 264 | 3.79E-11 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 280 | 327 | 3.1E-20 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 224 | 260 | 1.6E-11 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 88 | 8.2E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 134 | 184 | 8.6E-20 | - |
| SMART | SM00165 | uba_6 | 141 | 181 | 2.8E-4 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 84 | 4.5E-14 | IPR000626 |
| SMART | SM00165 | uba_6 | 288 | 325 | 1.2E-8 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 139 | 182 | 12.137243 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 286 | 326 | 14.40237 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 88 | 16.951357 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 282 | 298 | 2.1E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 229 | 251 | 2.1E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 299 | 313 | 2.1E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 314 | 329 | 2.1E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 117 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021309926.1 | probable ubiquitin receptor RAD23 [Sorghum bicolor] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TDQ9 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_42971 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology