Basic Information
Locus ID:
nbis-gene-19790
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00018.1 | 2081246 | 2083361 | + | nbis-gene-19790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 61,673.30 Da | 58.01 | 70.43 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 489 | 525 | 6.2E-6 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 484 | 528 | 1.06E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 333 | 388 | 1.2E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 332 | 425 | 4.4E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 478 | 552 | 1.8E-11 | - |
| SMART | SM00184 | ring_2 | 434 | 499 | 2.1 | IPR001841 |
| SMART | SM00184 | ring_2 | 337 | 386 | 0.2 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 337 | 382 | 9.568184 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 333 | 550 | 22.065046 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 355 | 364 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 325 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002462436.2 | probable E3 ubiquitin-protein ligase RNF217 [Sorghum bicolor] | 0 |
| Q7Z419 | E3 ubiquitin-protein ligase RNF144B OS=Homo sapiens OX=9606 GN=RNF144B PE=1 SV=1 | 0 | |
| TrEMBL | A0A811NAG9 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS12899 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.2028, BH03.2377, CH03.2352, CH03.2353 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481110.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_005352, gene-QYE76_005438, gene-QYE76_015362 |
| Poaceae | Oryza coarctata | 2 | Oco17G005570, Oco18G005680 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G192700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009320, Chr10G009330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G354700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034770, gene_TRIDC5BG036480 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G215600.1, TraesCS5B02G214100.1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19790 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32591 |