Basic Information
Locus ID:
nbis-gene-19630
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00018.1 | 1409659 | 1415382 | - | nbis-gene-19630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 89,808.48 Da | 69.16 | 64.36 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11455 | bHLH_AtAIG1_like | 655 | 727 | 2.37575E-28 | - |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 656 | 702 | 5.7E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 656 | 708 | 1.96E-12 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 649 | 709 | 2.7E-14 | IPR036638 |
| SMART | SM00353 | finulus | 659 | 708 | 6.2E-12 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 653 | 702 | 15.440233 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 480 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 556 | 621 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 636 | 665 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 275 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25710.1 | basic helix-loop-helix 32. Encodes a basic helixloophelix transcription factor that is expressed in the hypophysis-adjacent embryo cells, and is required and partially sufficient for MP-dependent root initiation. Involved in response to phosphate starvation. Negative regulator of root hair development, anthocyanin formation and Pi content. | 0 |
| RefSeq | XP_004957058.1 | proline-rich extensin-like protein EPR1 [Setaria italica] | 0 |
| Q9LS08 | Transcription factor AIG1 OS=Arabidopsis thaliana OX=3702 GN=BHLH32 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9MY34 | J domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology