Basic Information
Locus ID:
nbis-gene-19624
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00018.1 | 1390944 | 1398069 | + | nbis-gene-19624 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.93 | 49,306.63 Da | 60.13 | 61.51 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 350 | 431 | 3.4E-12 | IPR001394 |
| Pfam | PF01753 | MYND finger | 293 | 330 | 5.2E-9 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 346 | 431 | 3.53E-18 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 290 | 332 | 1.48E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 333 | 442 | 3.0E-20 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 284 | 332 | 1.0E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 293 | 330 | 12.095267 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 351 | 438 | 11.492468 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 293 | 330 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 91 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_004957062.1 | ubiquitin carboxyl-terminal hydrolase 17 [Setaria italica] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5VCR2 | MYND-type domain-containing protein (Fragment) OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0016039 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology