Basic Information
Locus ID:
nbis-gene-19553
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00018.1 | 1068279 | 1079797 | - | nbis-gene-19553 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 47,747.28 Da | 52.73 | 86.21 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 220 | 329 | 6.2E-5 | IPR013187 |
| Pfam | PF00646 | F-box domain | 21 | 57 | 1.8E-9 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 104 | 267 | 5.23E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 19 | 84 | 8.63E-15 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 58 | 1.6E-6 | - |
| SMART | SM00256 | fbox_2 | 19 | 59 | 7.3E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 114 | 350 | 8.2E-28 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G47790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021308737.1 | putative F-box protein At3g17480 [Sorghum bicolor] | 0 |
| Q9FZF8 | Putative F-box protein At1g47790 OS=Arabidopsis thaliana OX=3702 GN=At1g47790 PE=4 SV=1 | 0 | |
| TrEMBL | A0A811N462 | F-box domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS12648 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology