Basic Information
Locus ID:
nbis-gene-19346
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00018.1 | 217881 | 222458 | - | nbis-gene-19346 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.20 | 50,047.57 Da | 58.19 | 81.85 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 404 | 446 | 9.4575E-18 | - |
| Pfam | PF13639 | Ring finger domain | 404 | 446 | 5.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 398 | 451 | 4.08E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 366 | 452 | 1.9E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 404 | 445 | 8.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 404 | 446 | 12.267982 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10160.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039805014.1 | probable E3 ubiquitin-protein ligase ATL45 [Panicum virgatum] | 0 |
| Q9SN27 | E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TBK6 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42124 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Zoysia japonica | 1 | nbis-gene-19346 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32886 |