Basic Information
Locus ID:
nbis-gene-19343
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Protein of unknown function (DUF563)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00018.1 | 202539 | 213248 | - | nbis-gene-19343 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 126,491.78 Da | 56.93 | 76.75 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 750 | 793 | 3.59573E-17 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 1109 | 1151 | 1.94678E-19 | - |
| Pfam | PF04577 | Protein of unknown function (DUF563) | 243 | 468 | 1.8E-22 | IPR007657 |
| Pfam | PF13639 | Ring finger domain | 750 | 793 | 1.6E-10 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 1108 | 1151 | 8.4E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 615 | 650 | 5.6E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 746 | 801 | 6.06E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 1105 | 1155 | 1.9E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 879 | 919 | 1.13E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 616 | 656 | 3.03E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1062 | 1156 | 6.3E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 726 | 800 | 1.1E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 611 | 658 | 1.6E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 873 | 915 | 5.4E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 751 | 792 | 8.2E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 873 | 912 | 0.55 | IPR001841 |
| SMART | SM00184 | ring_2 | 613 | 649 | 0.035 | IPR001841 |
| SMART | SM00184 | ring_2 | 1109 | 1150 | 2.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1109 | 1151 | 11.471321 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 613 | 650 | 9.317383 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 751 | 793 | 11.500827 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1044 | 1071 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 866 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1040 | 1093 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1072 | 1093 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18170.1 | Glycosyltransferase family 61 protein. | 0 |
| RefSeq | XP_025813025.1 | uncharacterized protein LOC112890333 [Panicum hallii] | 0 |
| Q6ZFR0 | Alpha-1,3-arabinosyltransferase XAT2 OS=Oryza sativa subsp. japonica OX=39947 GN=XAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TBE3 | HGA6 OS=Eragrostis curvula OX=38414 GN=EJB05_42107 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 7 | AH06.1889, AH07.3701, BH06.1730, BH06.1741, BH07.3518 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541950, gene-QOZ80_6BG0495140 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G155200, gene-BS78_K228100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G015730, Chr11G006580, Chr11G006590 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19343 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32890 |