Basic Information
Locus ID:
nbis-gene-19262
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00017.1 | 3642192 | 3647333 | + | nbis-gene-19262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 37,539.23 Da | 43.85 | 84.58 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 79 | 116 | 2.2E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 128 | 161 | 1.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 50 | 332 | 1.25E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 67 | 333 | 1.8E-48 | IPR015943 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 2.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 211 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 292 | 40.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 77 | 116 | 3.6E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 84 | 125 | 13.516088 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 84 | 118 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 129 | 170 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 129 | 166 | 10.917412 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_004982941.1 | WD repeat-containing protein 26 [Setaria italica] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9V4L7 | LisH domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_22072 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology