Basic Information
Locus ID:
nbis-gene-19226
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00017.1 | 3438497 | 3440789 | - | nbis-gene-19226 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 39,263.74 Da | 36.67 | 91.42 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 169 | 240 | 2.46401E-6 | - |
| CDD | cd17039 | Ubl_ubiquitin_like | 100 | 160 | 1.58783E-14 | - |
| Pfam | PF00240 | Ubiquitin family | 100 | 161 | 2.0E-14 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 246 | 315 | 8.3E-12 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 20 | 86 | 9.7E-14 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 164 | 242 | 2.75E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 242 | 319 | 5.28E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 6 | 86 | 3.24E-16 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 87 | 161 | 6.1E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 18 | 87 | 2.9E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 88 | 164 | 1.8E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 240 | 332 | 2.8E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 166 | 239 | 6.0E-9 | - |
| SMART | SM00213 | ubq_7 | 243 | 314 | 9.5E-5 | IPR000626 |
| SMART | SM00213 | ubq_7 | 167 | 242 | 0.25 | IPR000626 |
| SMART | SM00213 | ubq_7 | 90 | 162 | 3.5E-9 | IPR000626 |
| SMART | SM00213 | ubq_7 | 18 | 87 | 3.5E-12 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 90 | 161 | 18.17078 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 243 | 318 | 14.29476 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 18 | 87 | 16.624727 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 167 | 242 | 9.286418 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 68 | 89 | 1.4E-9 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 26 | 46 | 1.4E-9 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 47 | 67 | 1.4E-9 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 345 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.3 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 0 |
| RefSeq | XP_039832051.1 | polyubiquitin 12-like [Panicum virgatum] | 0 |
| P0CG74 | Polyubiquitin OS=Candida albicans OX=5476 GN=UBI4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0A8ZN82 | Polyubiquitin-like OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH01.1773, BH01.2094, CH01.2025, CH01.2026, CH01.2027 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0127800, gene-QOZ80_2BG0183260 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0042620.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_017527, gene-QYE76_067660 |
| Poaceae | Oryza coarctata | 2 | Oco19G005960, Oco20G005870 |
| Poaceae | Oryza sativa | 2 | LOC_Os10g33620.1, LOC_Os11g18670.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G206400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G011030, Chr13G014190 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG028140 |
| Poaceae | Triticum aestivum | 2 | TraesCS1B02G171700.1, TraesCS1D02G151600.1 |
| Poaceae | Zea mays | 1 | Zm00001eb045950_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19226 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16186 |