Basic Information
Locus ID:
nbis-gene-19012
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Glycosyl transferase family 41
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00017.1 | 2419928 | 2428456 | + | nbis-gene-19012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.08 | 44,865.98 Da | 29.96 | 83.47 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13181 | Tetratricopeptide repeat | 113 | 144 | 0.011 | IPR019734 |
| Pfam | PF13414 | TPR repeat | 267 | 308 | 9.5E-9 | - |
| Pfam | PF13414 | TPR repeat | 186 | 220 | 2.5E-7 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 49 | 239 | 1.39E-24 | - |
| SUPERFAMILY | SSF48452 | TPR-like | 157 | 366 | 1.52E-39 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 43 | 145 | 8.8E-17 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11380 | - | 363 | 402 | 5.7E-8 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 240 | 300 | 4.6E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 301 | 362 | 1.2E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 183 | 239 | 3.8E-11 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 146 | 182 | 9.1E-8 | IPR011990 |
| SMART | SM00028 | tpr_5 | 176 | 209 | 1.9E-5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 210 | 259 | 99.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 79 | 112 | 3.9 | IPR019734 |
| SMART | SM00028 | tpr_5 | 45 | 78 | 330.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 294 | 327 | 2.7E-5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 147 | 175 | 460.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 113 | 146 | 7.4E-5 | IPR019734 |
| SMART | SM00028 | tpr_5 | 260 | 293 | 0.0017 | IPR019734 |
| ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 294 | 326 | 9.024772 | - |
| ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 176 | 208 | 8.822659 | - |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 260 | 293 | 9.2929 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 176 | 209 | 11.151401 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 294 | 327 | 10.8269 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 113 | 146 | 9.5879 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 79 | 112 | 8.6734 | IPR019734 |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G04240.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene. | 0 |
| RefSeq | XP_004952491.1 | probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Setaria italica] | 0 |
| Q9M8Y0 | Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana OX=3702 GN=SEC PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5V0D5 | Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0020506 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000044119 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28183 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2BG002960, gene_TRIDC3BG074590 |
| Poaceae | Triticum aestivum | 1 | TraesCS2B02G245700.1 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19012, nbis-gene-28383 |
| Posidoniaceae | Posidonia oceanica | 5 | gene.Posoc02g22890, gene.Posoc02g28750, gene.Posoc05g03890 ... |