Basic Information
Locus ID:
nbis-gene-19004
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
Nuclear transport factor 2 (NTF2) domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00017.1 | 2321135 | 2326293 | + | nbis-gene-19004 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 51,418.39 Da | 61.40 | 62.03 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00780 | NTF2 | 18 | 141 | 5.19339E-42 | IPR018222 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 22 | 140 | 1.2E-28 | IPR002075 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 315 | 378 | 1.4E-10 | IPR000504 |
| SUPERFAMILY | SSF54427 | NTF2-like | 18 | 141 | 8.77E-35 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 294 | 402 | 3.22E-18 | IPR035979 |
| Gene3D | G3DSA:3.10.450.50 | - | 13 | 144 | 2.2E-37 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 296 | 435 | 3.2E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 314 | 386 | 1.5E-12 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 22 | 140 | 29.994717 | IPR018222 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 313 | 390 | 11.91223 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 425 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 221 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.2 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | NP_001136675.1 | RNA-binding protein-like protein [Zea mays] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | B4FJT7 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain OS=Zea mays OX=4577 GN=100216804 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology