Basic Information
Locus ID:
nbis-gene-18924
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00017.1 | 1949381 | 1950060 | + | nbis-gene-18924 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 23,178.51 Da | 45.22 | 78.57 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 27 | 219 | 2.29E-13 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 223 | 9.6E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 123 | 163 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 22 | 57 | 10.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 130 | 166 | 9.171722 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_040377344.1 | WD repeat-containing protein LWD1 [Oryza brachyantha] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J5SP74 | WD_REPEATS_REGION domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0002g24719 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology