Basic Information
Locus ID:
nbis-gene-18749
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Short Name:
CPS
Description:
Terpene synthase, N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00017.1 | 1166960 | 1176980 | - | nbis-gene-18749 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 81,679.68 Da | 62.10 | 75.77 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 518 | 561 | 3.96124E-22 | - |
| Pfam | PF13639 | Ring finger domain | 518 | 561 | 9.0E-13 | IPR001841 |
| Pfam | PF01397 | Terpene synthase, N-terminal domain | 211 | 353 | 2.4E-39 | IPR001906 |
| SUPERFAMILY | SSF57850 | RING/U-box | 510 | 567 | 4.24E-21 | - |
| SUPERFAMILY | SSF48239 | Terpenoid cyclases/Protein prenyltransferases | 211 | 352 | 1.36E-39 | IPR008930 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 480 | 567 | 4.8E-21 | IPR013083 |
| Gene3D | G3DSA:1.50.10.130 | - | 207 | 372 | 1.3E-46 | IPR036965 |
| SMART | SM00184 | ring_2 | 519 | 560 | 3.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 519 | 561 | 12.489278 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 56 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02780.1 | Terpenoid cyclases/Protein prenyltransferases superfamily protein. Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis | 0 |
| RefSeq | XP_025821915.1 | E3 ubiquitin-protein ligase ATL31-like [Panicum hallii] | 0 |
| Q6ET36 | Ent-copalyl diphosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CPS1 PE=2 SV=1 | 0 | |
| TrEMBL | K3Z0U2 | RING-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 6 | AH07.2289, AH09.1175, BH06.2110, BH09.1276, CH07.2181 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0315720, gene-QOZ80_4BG0346710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0172140.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013370, gene-QYE76_024068, gene-QYE76_044350 |
| Poaceae | Oryza coarctata | 4 | Oco03G013260, Oco04G013140, Oco07G007180, Oco08G007090 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g36300.1, LOC_Os04g37730.1, LOC_Os12g10450.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G115100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302550, Pt_Chr0504746 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr23G011920, Chr25G007850, Chr26G007610 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G559300 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG046230, gene_TRIDC2BG049170 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G318200.1.cds1, TraesCS2B02G336300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb081330_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18749, nbis-gene-27038, nbis-gene-37715 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19798 |