Basic Information
Locus ID:
nbis-gene-18548
Species & Taxonomic ID:
Zoysia japonica & 309978
Genome Assembly:
GCA_040438285.1
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zjn_sc00017.1 | 253200 | 260518 | + | nbis-gene-18548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 79,671.54 Da | 48.63 | 59.93 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 45 | 264 | 3.96E-8 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 32 | 260 | 5.8E-6 | IPR011989 |
| Gene3D | G3DSA:2.30.30.140 | - | 515 | 553 | 9.7E-6 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 521 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 484 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 670 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 608 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 734 | - | - |
| Coils | Coil | Coil | 6 | 26 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_025804893.1 | microtubule-associated protein futsch-like isoform X3 [Panicum hallii] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3GQX7 | Tudor domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G304900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology